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BREAKING: Shell to Python migration + Command namespace changes.

Shell Scripts to Python

All .sh scripts replaced by .py equivalents. Requires Python 3.10+.
OldNew
.trellis/scripts/*.sh.trellis/scripts/*.py
.trellis/scripts/multi-agent/.trellis/scripts/multi_agent/
./script.shpython3 ./script.py

Command Namespace

Commands moved to namespaced paths:
PlatformOldNew
Claude Code.claude/commands/start.md.claude/commands/trellis/start.md
Cursor.cursor/commands/start.md.cursor/commands/trellis-start.md
Run trellis update --migrate to apply changes.